CHANGES IN ADDITIVE AND NONADDITIVE
GENETIC EVALUATION FOR WEIGHT DURING PREWEANING GROWTH USING A MULTIBREED
ANIMAL EVALUATION PROCEDURE[1]
C. Manrique, M. A. Elzo, W. O. Odenya, L.
R. McDowell, and D. L. Wakeman
Department of Animal Science, University
of Florida, Gainesville 32611
[1] Animal
Breeding Mimeo Series, No. 15, Animal Science Dept., University of Florida,
Gainesville, pp 1-17.
Most of the beef breeds in the United
States currently have national genetic evaluation programs that have the
potential to provide genetic values on over 600,000 registered beef animals
each year (Benyshek et al., 1988).
Predictions of genetic values obtained in these evaluations are reported
as Expected Progeny Differences (EPD) for growth traits by the purebred
associations in their sire evaluation reports (BIF, 1990). However, these evaluations account only for
additive genetic effects and can not be used to compare bulls in multibreed
populations, where the genetic value of a sire depends on additive and nonadditive
genetic effects (Elzo, 1983). In
addition, sire evaluation reports contain genetic evaluations for the complete
preweaning growth period only, i.e., growth from birth to weaning. However, bulls to be used in crossbreeding
programs for a particular year are selected when the current calf crop is
between one to three months of age.
Genetic evaluations at earlier ages than weaning would help to make such
selection decisions based on the current calf crop data feasible. Furthermore, traits that could be measured
simultaneously with weight at weaning (e.g., macrominerals) could also be
measured at these earlier ages.
Macrominerals such as calcium, phosphorus and magnesium are reasonable
choices to be used in these evaluations because of their known physiological
and biochemical relationship to growth (Littledike and Goff, 1987; Arnaud and
Sanchez, 1990). Consequently, the
objectives of this study were: 1) to obtain predictions of additive and
nonadditive genetic effects for weight at 120, 150 and 205 d of age when a
macromineral was used in the genetic evaluation, and 2) to determine changes in
the ranking of sires across sire breed groups across the ages mentioned above.
Description of data
Data from 380 calves born during 1989 and
1990 were collected from birth to weaning.
These animals form part of the Angus-Brahman multibreed herd of the
University of Florida, located at the Pine Acres Research station in Citra, and
they were produced by the mating of six sire breed groups consisting of Angus
(A), Brahman (B), .75A .25B, .5A .5B, .25A .75B, and Brangus (.625A .375B), to
the same breed groups of dams except that .25A .75B were unavailable. The distribution of sires and dams per breed
group are presented in Table 1. Between
two (.75A .25B in 1989) and five (Brangus in 1990) sires were available per
breed group per year, for a total of 28.
To ensure connectedness in the data set, between one (.5A .5B) and three
(A) sires per breed group were represented in both 1989 and 1990. A total of 243 dams were used. There was a minimum of 14 dams (.75A .25B in
1990) and a maximum of 65 dams (A in 1989) per breed group per year. The distribution of progeny by mating
subclass in both years is presented in Table 2. There were between three (.5A .5B sires mated to .75A .25B dams)
and forty (B sires mated to B dams) calves per mating subclass.
Data included measurements of weight (WT)
and serum calcium (Ca), serum phosphorus (P), and serum magnesium (Mg) after
birth up to weaning at intervals of approximately five weeks. Age at first sampling ranged from 1 to 85 d
(97% of calves were sampled within 70 d of birth). Age at weaning ranged from 151 to 275 d (91% of calves were
weaned between 210 and 270 d of age).
Amounts of macrominerals were obtained using the estimated serum volume
for each calf and the concentration of each mineral, as described by Odenya et
al. (1992a). Weights and macrominerals
were then adjusted to 120, 150 and 205 d based on the formula recommended by
the Beef Improvement Federation (BIF, 1990), where records from the first
sampling were used instead of those at birth.
Genetic Analysis
The multibreed genetic evaluation program
(MGEP) developed by Elzo (personal communication) was used to compute
predictions of additive and nonadditive genetic
effects for weight and macrominerals at
120, 150, and 205 d. For this study,
fixed and random effects for two traits were computed using a sire-maternal
grandsire model. The fixed effects were
contemporary groups, sex of calf H dam age group subclass, additive genetic
groups (sire group, maternal grandsire group, maternal granddam group),
nonadditive genetic groups (sire group H dam group subclass, maternal grandsire
group H maternal granddam group subclass). Contemporary group included the effects of
year and management group within year.
There were three sex classes (bull, heifer and steer) and three dam age
classes (under 3 yr of age, 3-5, and over 5 yr). The random effects were sire additive direct genetic effects,
sire nonadditive direct genetic effects (sire H breed group of
dam subclass), and residual effects.
These random effects were assumed to be uncorrelated among
themselves. Sire additive genetic
effects were assumed to have mean zero and covariance matrix Aσs2
, where σs2 is the sire additive genetic variance
and A is the additive genetic relationship matrix (Henderson, 1976). The sire additive genetic variance
represents .25 the additive genetic variance.
Sire nonadditive direct genetic effects and residuals were assumed to
have mean zero and each with a common variance. Additive and nonadditive maternal genetic effects were not
included in these evaluations because their variances and covariances could not
be estimated in this data set (27% of the calves had an unknown maternal
grandsire, and most of the known maternal grandsires were mated to dams of the
same breed group as the maternal grandsires).
Table 3 presents the values of additive and nonadditive direct genetic
variances and covariances used for these genetic evaluations. These variances and covariances were assumed
to be the same for all breed groups of sires.
For this study, the predicted genetic
values for weight were expressed as additive expected progeny differences
(AEPD) and nonadditive expected progeny differences (NEPD). The sum of AEPD and NEPD was defined as
multibreed expected progeny differences (MEPD). Correlations between AEPD and NEPD across ages were computed
using the genetic values obtained in evaluations that involved the same traits. The ranking of sires across sire breed
groups was determined for AEPD and MEPD for weight based on a two-trait
multibreed genetic evaluation procedure where the other trait involved was
either serum Ca, P or Mg. Rank
correlations between AEPD and NEPD across ages were computed for all the
evaluations.
Results and Discussion
Prediction of Genetic Effects when a
Macromineral is Involved in the Evaluation
To investigate changes in genetic values
that may occur over time, predictions of sire additive and nonadditive genetic
values for weight at 120, 150 and 205 d for the sires used in the Angus-Brahman
multibreed herd are presented in Table
4, Table 5 and Table 6 when serum Ca, P or Mg was involved in the evaluation,
respectively.
Differences in AEPD from 120 to 205 d were found for most of the sires through all the evaluations with macrominerals. The largest changes through all these evaluations were for the B sire 10 (.61 kg at 150 d to 1.18 kg at 205 d, Table 4; .48 kg at 150 d to 1.30 kg at 205 d, Table 5; .58 kg at 150 d to 1.02 kg at 205 d, Table 6). Differences among NEPD occurred through all evaluations for all breed groups of dams and for most of the sires across ages. The largest changes were found in 5.A .5B dams that were mated to B sires (.29 kg at 120 d to .79 kg at 205 d, Table 4; 1.06 kg at 150 to 53 kg at 205 d, Table 5; 1.02 kg at 150 d to .69 kg at 205 d, Table 6). However, correlations among predictions of genetic effects across ages were high and important (P < .01, Table 7). Correlations among predictions of AEPD across ages for all macrominerals ranged from .83 to .99 (Table 7). This indicates that no major differences existed for sire additive genetic effects during the growth of the animals in this multibreed herd at the ages studied here. Correlations among predictions of NEPD at different ages for all the macrominerals ranged from .80 to .99 (Table 7). Thus, the combining ability of sires when mated to dams of a particular breed group had no significant differences through the growth of the animals. These results suggest that evaluating bulls when their calves are younger (e.g., at 120 d of age) would identify the best bulls at weaning fairly accurately. This is an advantage for producers who want to use the evaluation of their bulls using the current calf crop to choose those bulls to be used in the breeding season to produce the next calf crop.
Sire Rankings for Weight at Several Calf
Ages
The ranking of sires across sire
breed groups for weight at 120, 150 and 205 d when Ca, P or Mg are involved in
the evaluations are presented in Tables 5-8, 5-9, and 5-10, respectively. There were differences in sire rankings
through all ages for AEPD through all macrominerals. However, the ranking of the three top sires was essentially the
same across calf ages when Ca or P were involved in the evaluation (Tables 5-8
and 5-9, respectively). For Mg, only
the B sire 10 was ranked the same across calf ages (Table 10). Rank correlations among predictions of AEPD
across ages were high (>.95) and important (P < .01) for all
macrominerals. Therefore, the ranking
of sires for additive genetic effects was not affected notably by changes in
the prediction of AEPD. Moderate
differences in sire rankings occurred for MEPD across all breed groups of dams
and all ages (Tables 5-8, 5-9 and 5-10).
These differences were due to changes in the NEPD. Rank correlations among predictions of MEPD
across ages within each breed group of dams were high (>.83) and important
(P < .01). Thus, sire rankings for
genetic effects had no significant changes across ages in this multibreed
herd. Animals that were ranked highest
in earlier stages of growth had similar rankings at weaning, which is the usual
age were selection or culling decisions are made. The advantage of having evaluated these animals prior to the
breeding season is may be reflected in more appropriate sire selection.
Prediction of additive and nonadditive
genetic effects at earlier stages of growth were similar to predictions of
genetic effects at weaning, the age at which producers usually make selection
or culling decisions. The small
differences in the predictions did not affect the ranking of sires across sire
breed groups for additive and nonadditive genetic effects at earlier
stages. These results suggest that
selection or culling decisions may be feasible at earlier stages than weaning
(e.g., at breeding time). This could be
particularly valuable for selection purposes within herds because producers
could use these earlier evaluations based on the current calf crop for
selection of bulls to breed the next calf crop. A more effective breeding program can be achieved.
Arnaud, C. D. and S. D.Sanchez. 1990.
Calcium and phosphorus. In: M.
L.Brown (Ed.). Present Knowledge in
Nutrition. p 212. Int. Life Sci. Inst., Washington, DC.
Benyshek, L. L., M. H. Johnson, D. E.
Little, J. K. Bertrand, and L. A. Kriese.
1988. Applications of an animal
model in the United States beef cattle industry. J. Dairy Sci. 71:35.
BIF.
1990. Guidelines for uniform
beef improvement programs. North Carolina State Univ., Raleigh.
Elzo, M. A. 1983. Multibreed sire
evaluation within and across countries.
Ph.D. Dissertation. Univ. of
California, Davis.
Henderson, C. R. 1976.
A simple method for computing the inverse of a numerator relationship
matrix used in prediction of breeding values.
Biometrics 32:69.
Littledike, E. T. and J. Goff. 1987.
Interactions of calcium, phosphorus,
magnesium and vitamin D that influence their status in domestic meat
animals. J. Anim. Sci. 65:1727.
|
Table 1. DISTRIBUTION OF SIRES AND DAMS BY YEAR ACCORDING TO
BREED GROUP COMPOSITION |
|||||||||
|
|
Sires |
|
Dams |
||||||
|
Breed Groupa |
Total |
1989 |
1990 |
1989 & 1990b |
|
Total |
1989 |
1990 |
1989 & 1990c |
|
A .75A.25B .5A.5B .25A.75B B BRANGUS Total |
5 3 4 4 5 7 28 |
4 2 2 4 3 4 19 |
4 3 3 3 4 5 22 |
3 2 1 3 2 2 13 |
|
65 18 38 0 76 46 243 |
65 18 30 0 | ||